FOXA1/HNF3A CUTANA™ CUT&RUN Antibody
{"url":"https://www.epicypher.com/products/antibodies/foxa1-hnf3a-cutana-cut-run-antibody","add_this":[{"service":"facebook","annotation":""},{"service":"email","annotation":""},{"service":"print","annotation":""},{"service":"twitter","annotation":""},{"service":"linkedin","annotation":""}],"gtin":null,"id":796,"bulk_discount_rates":[],"can_purchase":true,"meta_description":"Rabbit polyclonal anti-FOXA1/HNF3A antibody validated for CUT&RUN, WB, IP. Rigorously tested for reliable and robust performance in CUT&RUN assays.","category":["Antibodies","Antibodies/CUTANA™ CUT&RUN Antibodies","Antibodies/CUTANA™ CUT&RUN Antibodies/CUT&RUN Antibodies - Chromatin-Associated Proteins","Epigenetics Kits and Reagents/CUTANA™ ChIC / CUT&RUN Assays"],"AddThisServiceButtonMeta":"","main_image":{"data":"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/{:size}/products/796/787/2020.12.08_CUTANA_ChAPs_Antibody_thumbnail_RGB_LS__81112.1607995124.png?c=2","alt":"FOXA1/HNF3A CUTANA™ CUT&RUN Antibody"},"add_to_wishlist_url":"/wishlist.php?action=add&product_id=796","shipping":{"calculated":true},"num_reviews":0,"weight":"0.01 LBS","custom_fields":[{"id":"654","name":"Pack size","value":"100 µL"}],"sku":"13-2001","description":"<div class=\"product-general-info\">\n <ul class=\"product-general-info__list-left\">\n <li class=\"product-general-info__list-item\">\n <strong>Type: </strong>Polyclonal\n </li>\n <li class=\"product-general-info__list-item\">\n <strong>Host: </strong>Rabbit\n </li>\n <li class=\"product-general-info__list-item\">\n <strong>Applications: </strong>CUT&RUN, WB, IP\n </li>\n </ul>\n <ul class=\"product-general-info__list-right\">\n <li class=\"product-general-info__list-item\">\n <strong>Reactivity: </strong>Human, Mouse (Predicted Rat)\n </li>\n <li class=\"product-general-info__list-item\">\n <strong>Format: </strong>Antigen affinity-purified\n </li>\n <li class=\"product-general-info__list-item\">\n <strong>Target Size: </strong>49 kDa\n </li>\n </ul>\n <ul style=\"padding: 0\" class=\"product-general-info__list-right\">\n <li class=\"product-general-info__list-item\">\n <a href=\"#bioz\">\n <div\n id=\"w-s-3835-13-2001\"\n style=\"\n width: 240px;\n height: 58px;\n position: relative;\n overflow-y: hidden;\n \"\n ></div>\n <div id=\"bioz-w-pb-13-2001-div\" style=\"width: 240px\">\n <a\n id=\"bioz-w-pb-13-2001\"\n style=\"font-size: 12px; color: transparent\"\n href=\"https://www.bioz.com/\"\n target=\"_blank\"\n >\n <img\n src=\"https://cdn.bioz.com/assets/favicon.png\"\n style=\"\n width: 11px;\n height: 11px;\n vertical-align: baseline;\n padding-bottom: 0px;\n margin-left: 0px;\n margin-bottom: 0px;\n float: none;\n display: none;\n \"\n />\n Powered by Bioz\n </a>\n </div>\n </a>\n </li>\n </ul>\n</div>\n<div class=\"service_accordion product-droppdown\">\n <div class=\"container\">\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel current\">\n <h3 class=\"sub-title1\">Description</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description-specific\"\n >\n <p>\n This antibody meets EpiCypher’s “CUTANA Compatible” criteria\n for performance in Cleavage Under Targets and Release Using\n Nuclease (CUT&RUN) and/or Cleavage Under Targets and\n Tagmentation (CUT&Tag) approaches to genomic mapping.\n Every lot of a CUTANA Compatible antibody is tested in the\n indicated approach using EpiCypher optimized\n <a href=\"/resources/protocols\" target=\"_blank\">protocols</a>\n and determined to yield peaks that show a genomic distribution\n pattern consistent with reported function(s) of the target\n protein. FOXA1 antibody produces CUT&RUN peaks above\n background primarily in intronic, intergenic, and promoter\n regions\n <strong>(Figure 1)</strong> that overlap with known FOXA1\n DNA-binding motifs <strong>(Figure 2)</strong>.\n </p>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel current\">\n <h3 class=\"sub-title1\">Validation Data</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description-specific\"\n >\n <section class=\"image-picker\">\n <div class=\"image-picker__left\">\n <div\n class=\"image-picker__main-content_active image-picker__main-content\"\n >\n <div class=\"image-picker__header-content\">\n <button class=\"image-picker__left-arrow\">\n <svg\n class=\"image-picker__svg-left\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M16.67 0l2.83 2.829-9.339 9.175 9.339 9.167-2.83 2.829-12.17-11.996z\"\n />\n </svg>\n </button>\n <a\n href=\"/content/images/products/antibodies/13_2001_heatmap.jpeg\"\n target=\"_new\"\n class=\"image-picker__main-image-link\"\n ><img\n loading=\"lazy\"\n alt=\"13_2001_Heatmap\"\n src=\"/content/images/products/antibodies/13_2001_heatmap.jpeg\"\n class=\"image-picker__main-image\"\n />\n <span class=\"image-picker__main-image-caption\"\n >(Click to enlarge)</span\n ></a\n >\n <button class=\"image-picker__right-arrow\">\n <svg\n class=\"image-picker__svg-right\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M7.33 24l-2.83-2.829 9.339-9.175-9.339-9.167 2.83-2.829 12.17 11.996z\"\n />\n </svg>\n </button>\n </div>\n <p>\n <span class=\"image-picker__span-content\"\n ><strong>Figure 1: FOXA1 peaks in CUT&RUN </strong\n ><br />\n CUT&RUN was performed as described in <strong>Figure 5</strong>. Peaks were\n called with MACS2. <b>(A)</b> Heatmap showing FOXA1\n peaks relative to IgG negative control antibody in\n aligned rows ranked by intensity (top to bottom) and\n colored such that red indicates high localized\n enrichment and blue denotes background signal.\n <b>(B)</b> The number of peaks that fall into distinct\n classes of functionally annotated genomic regions are\n shown.\n </span>\n </p>\n </div>\n <div class=\"image-picker__main-content\">\n <div class=\"image-picker__header-content\">\n <button class=\"image-picker__left-arrow\">\n <svg\n class=\"image-picker__svg-left\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M16.67 0l2.83 2.829-9.339 9.175 9.339 9.167-2.83 2.829-12.17-11.996z\"\n />\n </svg>\n </button>\n <a\n href=\"/content/images/products/antibodies/13_2001_tracks.jpeg\"\n target=\"_new\"\n class=\"image-picker__main-image-link\"\n ><img\n loading=\"lazy\"\n alt=\"13_2001_Tracks\"\n src=\"/content/images/products/antibodies/13_2001_tracks.jpeg\"\n class=\"image-picker__main-image\"\n />\n <span class=\"image-picker__main-image-caption\"\n >(Click to enlarge)</span\n ></a\n >\n <button class=\"image-picker__right-arrow\">\n <svg\n class=\"image-picker__svg-right\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M7.33 24l-2.83-2.829 9.339-9.175-9.339-9.167 2.83-2.829 12.17 11.996z\"\n />\n </svg>\n </button>\n </div>\n <p>\n <span class=\"image-picker__span-content\"\n ><strong\n >Figure 2: FOXA1 transcription factor binding motif\n analysis in CUT&RUN</strong\n ><br />\n (<b>A</b>) Homer analysis determined that the FOXA1\n consensus motif, represented as a sequence logo\n position weight matrix, was enriched under FOXA1\n CUT&RUN peaks. (<b>B</b>) The number of FOXA1 peaks\n containing consensus motifs from panel A is\n represented by a Venn Diagram. (<b>C</b>) Gene browser\n shots were generated using the Integrative Genomics\n Viewer (IGV, Broad Institute). Three representative\n loci show overlap of FOXA1 peaks with consensus\n motifs.\n </span>\n </p>\n </div>\n <div class=\"image-picker__main-content\">\n <div class=\"image-picker__header-content\">\n <button class=\"image-picker__left-arrow\">\n <svg\n class=\"image-picker__svg-left\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M16.67 0l2.83 2.829-9.339 9.175 9.339 9.167-2.83 2.829-12.17-11.996z\"\n />\n </svg>\n </button>\n <a\n href=\"/content/images/products/antibodies/13_2001_WB.jpeg\"\n target=\"_new\"\n class=\"image-picker__main-image-link\"\n ><img\n loading=\"lazy\"\n alt=\"13_2001_WB\"\n src=\"/content/images/products/antibodies/13_2001_WB.jpeg\"\n class=\"image-picker__main-image\"\n />\n <span class=\"image-picker__main-image-caption\"\n >(Click to enlarge)</span\n ></a\n >\n <button class=\"image-picker__right-arrow\">\n <svg\n class=\"image-picker__svg-right\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M7.33 24l-2.83-2.829 9.339-9.175-9.339-9.167 2.83-2.829 12.17 11.996z\"\n />\n </svg>\n </button>\n </div>\n <p>\n <span class=\"image-picker__span-content\"\n ><strong>Figure 3: Western blot data</strong><br />\n Western analysis of FOXA1 in whole cell lysates from\n MCF-7 and HeLa cells using NETN lysis buffer. The\n indicated amounts (µg) of lysate were loaded onto\n 4-20% SDS-PAGE gel and analyzed under standard western\n blot conditions using FOXA1 antibody (0.1 µg/mL).\n </span>\n </p>\n </div>\n <div class=\"image-picker__main-content\">\n <div class=\"image-picker__header-content\">\n <button class=\"image-picker__left-arrow\">\n <svg\n class=\"image-picker__svg-left\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M16.67 0l2.83 2.829-9.339 9.175 9.339 9.167-2.83 2.829-12.17-11.996z\"\n />\n </svg>\n </button>\n <a\n href=\"/content/images/products/antibodies/13_2001_IP.jpeg\"\n target=\"_new\"\n class=\"image-picker__main-image-link\"\n ><img\n loading=\"lazy\"\n alt=\"13_2012_IP\"\n src=\"/content/images/products/antibodies/13_2001_IP.jpeg\"\n class=\"image-picker__main-image\"\n />\n <span class=\"image-picker__main-image-caption\"\n >(Click to enlarge)</span\n ></a\n >\n <button class=\"image-picker__right-arrow\">\n <svg\n class=\"image-picker__svg-right\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M7.33 24l-2.83-2.829 9.339-9.175-9.339-9.167 2.83-2.829 12.17 11.996z\"\n />\n </svg>\n </button>\n </div>\n <p>\n <span class=\"image-picker__span-content\"\n ><strong\n >Figure 4: Immunoprecipitation of human\n FOXA1</strong\n ><br />\n EpiCypher FOXA1 antibody (6 µg) was used to\n immunoprecipitate whole cell lysates isolated from\n HeLa cells using NETN lysis buffer (1 mg per IP). A\n negative control IgG antibody and positive control\n antibody to a different FOXA1 epitope (Bethyl\n Laboratories) were also used to demonstrate\n specificity of the IP. Immunoprecipitates were loaded\n onto 4-20% SDS-PAGE gel (20% of IP loaded) and probed\n via western blot with EpiCypher FOXA1 antibody (1\n µg/mL).\n </span>\n </p>\n </div>\n <div class=\"image-picker__main-content\">\n <div class=\"image-picker__header-content\">\n <button class=\"image-picker__left-arrow\">\n <svg\n class=\"image-picker__svg-left\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M16.67 0l2.83 2.829-9.339 9.175 9.339 9.167-2.83 2.829-12.17-11.996z\"\n />\n </svg>\n </button>\n <a\n href=\"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/original/image-manager/2022.07.06-c-r-workflow-simple-rgb-ew.png?t=1697220982&_gl=1*u66xe1*_ga*NDc4MDE2MzAxLjE2OTY2MjA3NTU.*_ga_WS2VZYPC6G*MTY5NzY5NzkxNi4zNi4xLjE2OTc2OTk4OTEuNTYuMC4w\"\n target=\"_new\"\n class=\"image-picker__main-image-link\"\n ><img\n loading=\"lazy\"\n alt=\"13_2012_IP\"\n src=\"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/original/image-manager/2022.07.06-c-r-workflow-simple-rgb-ew.png?t=1697220982&_gl=1*u66xe1*_ga*NDc4MDE2MzAxLjE2OTY2MjA3NTU.*_ga_WS2VZYPC6G*MTY5NzY5NzkxNi4zNi4xLjE2OTc2OTk4OTEuNTYuMC4w\"\n class=\"image-picker__main-image\"\n />\n <span class=\"image-picker__main-image-caption\"\n >(Click to enlarge)</span\n ></a\n >\n <button class=\"image-picker__right-arrow\">\n <svg\n class=\"image-picker__svg-right\"\n width=\"24\"\n height=\"24\"\n viewBox=\"0 0 24 24\"\n >\n <path\n d=\"M7.33 24l-2.83-2.829 9.339-9.175-9.339-9.167 2.83-2.829 12.17 11.996z\"\n />\n </svg>\n </button>\n </div>\n <p>\n <span class=\"image-picker__span-content\"\n ><strong>Figure 5: CUT&RUN Methods</strong><br />\n CUT&RUN was performed on 500k MCF7 cells with 0.5 µg\n of either FOXA1/HNF3A or IgG negative control\n (EpiCypher\n <a\n href=\"/products/nucleosomes/snap-cutana-spike-in-controls/cutana-rabbit-igg-cut-run-negative-control-antibody\"\n target=\"_blank\"\n >13-0042</a\n >) antibodies using the CUTANA™ ChIC/CUT&RUN Kit v2.0\n (EpiCypher\n <a\n href=\"/products/epigenetics-reagents-and-assays/cutana-chic-cut-and-run-kit\"\n target=\"_blank\"\n >14-1048</a\n >). Library preparation was performed with 5 ng of DNA\n (or the total amount recovered if less than 5 ng)\n using the CUTANA™ CUT&RUN Library Prep Kit (EpiCypher\n <a\n href=\"/products/epigenetics-reagents-and-assays/cutana-cut-and-run-library-prep-kit\"\n target=\"_blank\"\n >14-1001/14-1002</a\n >). Both kit protocols were adapted for high\n throughput Tecan liquid handling. Libraries were run\n on an Illumina NextSeq2000 with paired-end sequencing\n (2x50 bp). Sample sequencing depth was 2.5 million\n reads (FOXA1) and 2.4 million reads (IgG). Data were\n aligned to the hg19 genome using Bowtie2. Data were\n filtered to remove duplicates, multi-aligned reads,\n and ENCODE DAC Exclusion List regions.\n </span>\n </p>\n </div>\n </div>\n\n <aside class=\"image-picker__right\">\n <div class=\"image-picker__gallery\">\n <img\n loading=\"lazy\"\n alt=\"13_2001_heatmap\"\n src=\"/content/images/products/antibodies/13_2001_heatmap.jpeg\"\n width=\"200\"\n class=\"image-picker__side-image image-picker__side-image_active\"\n role=\"button\"\n />\n <img\n loading=\"lazy\"\n alt=\"13_2001_tracks\"\n src=\"/content/images/products/antibodies/13_2001_tracks.jpeg\"\n class=\"image-picker__side-image\"\n role=\"button\"\n />\n <img\n loading=\"lazy\"\n alt=\"13_2001_WB\"\n src=\"/content/images/products/antibodies/13_2001_WB.jpeg\"\n class=\"image-picker__side-image\"\n role=\"button\"\n />\n <img\n loading=\"lazy\"\n alt=\"13_2012_IP\"\n src=\"/content/images/products/antibodies/13_2001_IP.jpeg\"\n class=\"image-picker__side-image\"\n role=\"button\"\n />\n <img\n loading=\"lazy\"\n alt=\"13_2012_IP\"\n src=\"https://cdn11.bigcommerce.com/s-y9o92/images/stencil/original/image-manager/2022.07.06-c-r-workflow-simple-rgb-ew.png?t=1697220982&_gl=1*u66xe1*_ga*NDc4MDE2MzAxLjE2OTY2MjA3NTU.*_ga_WS2VZYPC6G*MTY5NzY5NzkxNi4zNi4xLjE2OTc2OTk4OTEuNTYuMC4w\"\n class=\"image-picker__side-image\"\n role=\"button\"\n />\n </div>\n </aside>\n </section>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel\">\n <h3 class=\"sub-title1\">Technical Information</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description\"\n >\n <div class=\"product-tech-info\">\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Immunogen</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n Between amino acids 422 and 472\n </div>\n </div>\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Storage</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n Stable for 1 year at 4°C from date of receipt\n </div>\n </div>\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Formulation</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n Antigen affinity-purified antibody in\n Tris-citrate/phosphate buffer pH 7-8, 0.09% sodium azide\n </div>\n </div>\n </div>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel\">\n <h3 class=\"sub-title1\">Recommended Dilution</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description\"\n >\n <div class=\"product-tech-info\">\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>CUT&RUN:</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n 0.5 µg per reaction\n </div>\n </div>\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Western Blot (WB):</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n 1:2,000 - 1:10,000\n </div>\n </div>\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Immunoprecipitation (IP):</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n 2 - 10 µg/mg lysate\n </div>\n </div>\n </div>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel\">\n <h3 class=\"sub-title1\">Gene & Protein Information</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description\"\n >\n <div class=\"product-tech-info\">\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>UniProt ID</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">P55317</div>\n </div>\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Gene Name</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">FOXA1</div>\n </div>\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Protein Name</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n Hepatocyte nuclear factor 3-alpha\n </div>\n </div>\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Target Size</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">49 kDa</div>\n </div>\n <div class=\"product-tech-info__line-item\">\n <div class=\"product-tech-info__line-item-left\">\n <b>Alternate Names</b>\n </div>\n <div class=\"product-tech-info__line-item-right\">\n HNF-3-alpha, HNF-3A, Forkhead box protein A1,\n Transcription factor 3A (TCF-3A), HNF3A, TCF3A\n </div>\n </div>\n </div>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel\">\n <h3 class=\"sub-title1\">Documents & Resources</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description\"\n >\n <div class=\"product-documents\">\n <a\n href=\"/content/documents/tds/13-2001.pdf\"\n target=\"_new\"\n class=\"product-documents__link\"\n >\n <svg\n version=\"1.1\"\n id=\"Layer_1\"\n xmlns=\"http://www.w3.org/2000/svg\"\n xmlns:xlink=\"http://www.w3.org/1999/xlink\"\n x=\"0px\"\n y=\"0px\"\n viewBox=\"0 0 228 240\"\n style=\"enable-background: new 0 0 228 240\"\n xml:space=\"preserve\"\n class=\"product-documents__icon\"\n >\n <g>\n <path\n class=\"product-documents__svg-pdf\"\n d=\"M191.92,68.77l-47.69-47.69c-1.33-1.33-3.12-2.08-5.01-2.08H45.09C41.17,19,38,22.17,38,26.09v184.36\n c0,3.92,3.17,7.09,7.09,7.09h141.82c3.92,0,7.09-3.17,7.09-7.09V73.8C194,71.92,193.25,70.1,191.92,68.77z M177.65,77.06h-41.7\n v-41.7L177.65,77.06z M178.05,201.59H53.95V34.95h66.92v47.86c0,5.14,4.17,9.31,9.31,9.31h47.86V201.59z\"\n />\n </g>\n <rect\n x=\"20\"\n y=\"112\"\n class=\"product-documents__svg-background\"\n width=\"146\"\n height=\"76\"\n />\n <g>\n <path\n class=\"product-documents__svg-pdf\"\n d=\"M23.83,125.68h22.36c5.29,0,9.41,1.33,12.35,4c2.94,2.67,4.42,6.39,4.42,11.18c0,4.78-1.47,8.51-4.42,11.18\n c-2.94,2.67-7.06,4-12.35,4H34.59v18.29H23.83V125.68z M44.81,147.9c5.38,0,8.07-2.32,8.07-6.97c0-2.39-0.67-4.16-2-5.31\n c-1.33-1.15-3.36-1.73-6.07-1.73H34.59v14.01H44.81z\"\n />\n <path\n class=\"product-documents__svg-pdf\"\n d=\"M69.92,125.68h18.91c5.29,0,9.84,0.97,13.66,2.9c3.82,1.93,6.74,4.72,8.76,8.35\n c2.02,3.63,3.04,7.98,3.04,13.04c0,5.06-1,9.42-3,13.08c-2,3.66-4.91,6.45-8.73,8.38c-3.82,1.93-8.4,2.9-13.73,2.9H69.92V125.68z\n M88.07,165.63c10.35,0,15.52-5.22,15.52-15.66c0-10.4-5.17-15.59-15.52-15.59h-7.38v31.26H88.07z\"\n />\n <path\n class=\"product-documents__svg-pdf\"\n d=\"M122.57,125.68h32.84v8.49h-22.22v11.18h20.84v8.49h-20.84v20.49h-10.63V125.68z\"\n />\n </g>\n </svg>\n <span class=\"product-documents__info\"\n >Technical Datasheet</span\n >\n </a>\n </div>\n </div>\n </div>\n </div>\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel\">\n <h3 class=\"sub-title1\">Additional Info</h3>\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description\"\n >\n <p>\n This product is provided for commercial sale under license\n from Bethyl Laboratories, Inc.\n </p>\n </div>\n </div>\n </div>\n\n <div id=\"prodAccordion\">\n <div id=\"ProductDescription\" class=\"Block Panel current\">\n <h3\n id=\"bioz\"\n style=\"padding-bottom: 5px; margin-top: 1rem\"\n class=\"sub-title1\"\n >\n Product References\n </h3>\n\n <div\n class=\"ProductDescriptionContainer product-droppdown__section-description-specific\"\n >\n <object\n id=\"wobj-3835-13-2001-q\"\n type=\"text/html\"\n data=\"https://www.bioz.com/v_widget_6_0/3835/13-2001/\"\n style=\"width: 100%; height: 193px\"\n ></object>\n <div id=\"bioz-w-pb-3835-13-2001-q-div\" style=\"width: 100%\">\n <a\n id=\"bioz-w-pb-3835-13-2001-q\"\n style=\"\n font-size: 12px;\n text-decoration: none;\n color: #4698cb;\n \"\n href=\"https://www.bioz.com/\"\n target=\"_blank\"\n ><img\n src=\"https://cdn.bioz.com/assets/favicon.png\"\n style=\"\n width: 11px;\n height: 11px;\n vertical-align: baseline;\n padding-bottom: 0px;\n margin-left: 0px;\n margin-bottom: 0px;\n float: none;\n \"\n />\n Powered by Bioz</a\n >\n <a\n style=\"\n font-size: 12px;\n text-decoration: none;\n float: right;\n color: transparent;\n \"\n href=\"https://www.bioz.com/result/13-2001/product/EpiCypher/?cn=13-2001\"\n target=\"_blank\"\n >\n See more details on Bioz</a\n >\n </div>\n </div>\n </div>\n </div>\n </div>\n</div>\n<script>\n $(document).ready(function () {\n var widget_micro_obj = new v_widget_obj(\"s\", [1]);\n widget_micro_obj.request_catalog_number_widget_data_internal(\n \"13-2001\",\n \"13-2001\"\n );\n });\n</script>\n<style>\n 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- Type: Polyclonal
- Host: Rabbit
- Applications: CUT&RUN, WB, IP
- Reactivity: Human, Mouse (Predicted Rat)
- Format: Antigen affinity-purified
- Target Size: 49 kDa
Description
This antibody meets EpiCypher’s “CUTANA Compatible” criteria for performance in Cleavage Under Targets and Release Using Nuclease (CUT&RUN) and/or Cleavage Under Targets and Tagmentation (CUT&Tag) approaches to genomic mapping. Every lot of a CUTANA Compatible antibody is tested in the indicated approach using EpiCypher optimized protocols and determined to yield peaks that show a genomic distribution pattern consistent with reported function(s) of the target protein. FOXA1 antibody produces CUT&RUN peaks above background primarily in intronic, intergenic, and promoter regions (Figure 1) that overlap with known FOXA1 DNA-binding motifs (Figure 2).
Validation Data
Figure 1: FOXA1 peaks in CUT&RUN
CUT&RUN was performed as described in Figure 5. Peaks were
called with MACS2. (A) Heatmap showing FOXA1
peaks relative to IgG negative control antibody in
aligned rows ranked by intensity (top to bottom) and
colored such that red indicates high localized
enrichment and blue denotes background signal.
(B) The number of peaks that fall into distinct
classes of functionally annotated genomic regions are
shown.
Figure 2: FOXA1 transcription factor binding motif
analysis in CUT&RUN
(A) Homer analysis determined that the FOXA1
consensus motif, represented as a sequence logo
position weight matrix, was enriched under FOXA1
CUT&RUN peaks. (B) The number of FOXA1 peaks
containing consensus motifs from panel A is
represented by a Venn Diagram. (C) Gene browser
shots were generated using the Integrative Genomics
Viewer (IGV, Broad Institute). Three representative
loci show overlap of FOXA1 peaks with consensus
motifs.
Figure 3: Western blot data
Western analysis of FOXA1 in whole cell lysates from
MCF-7 and HeLa cells using NETN lysis buffer. The
indicated amounts (µg) of lysate were loaded onto
4-20% SDS-PAGE gel and analyzed under standard western
blot conditions using FOXA1 antibody (0.1 µg/mL).
Figure 4: Immunoprecipitation of human
FOXA1
EpiCypher FOXA1 antibody (6 µg) was used to
immunoprecipitate whole cell lysates isolated from
HeLa cells using NETN lysis buffer (1 mg per IP). A
negative control IgG antibody and positive control
antibody to a different FOXA1 epitope (Bethyl
Laboratories) were also used to demonstrate
specificity of the IP. Immunoprecipitates were loaded
onto 4-20% SDS-PAGE gel (20% of IP loaded) and probed
via western blot with EpiCypher FOXA1 antibody (1
µg/mL).
Figure 5: CUT&RUN Methods
CUT&RUN was performed on 500k MCF7 cells with 0.5 µg
of either FOXA1/HNF3A or IgG negative control
(EpiCypher
13-0042) antibodies using the CUTANA™ ChIC/CUT&RUN Kit v2.0
(EpiCypher
14-1048). Library preparation was performed with 5 ng of DNA
(or the total amount recovered if less than 5 ng)
using the CUTANA™ CUT&RUN Library Prep Kit (EpiCypher
14-1001/14-1002). Both kit protocols were adapted for high
throughput Tecan liquid handling. Libraries were run
on an Illumina NextSeq2000 with paired-end sequencing
(2x50 bp). Sample sequencing depth was 2.5 million
reads (FOXA1) and 2.4 million reads (IgG). Data were
aligned to the hg19 genome using Bowtie2. Data were
filtered to remove duplicates, multi-aligned reads,
and ENCODE DAC Exclusion List regions.
Technical Information
Recommended Dilution
Gene & Protein Information
Documents & Resources
Additional Info
This product is provided for commercial sale under license from Bethyl Laboratories, Inc.